Name
|
Version(s)
|
Description |
afni
|
2006_06_30_1332
|
AFNI
is a set of C programs for
processing, analyzing, and displaying functional MRI (FMRI) data - a
technique for mapping human brain activity.
|
amber
|
9.0
|
Assisted
Model Building with
Energy Refinement (AMBER) - is the collective name for a suite of
programs designed to carry out molecular dynamics simulations,
particularly on biomolecules. |
atlas
|
3.7.11
|
Automatically
Tuned Linear
Algebra Software. ATLAS's purpose is to provide portably optimal
linear
algebra software. The current version provides a complete BLAS API (for
both C and Fortran77),
and a very small subset of the LAPACK API. |
emacs
|
21.3
|
Extensible,
customizable,
self-documenting real-time
display editor |
fftw
|
3.1.2
|
Utility
to create FFT wisdom
files.
|
gaussian
|
03-d1
|
Gaussian
predicts the
energies, molecular structures, and
vibrational frequencies of molecular systems, along with numerous
molecular properties derived from these basic computation types. |
gcc
|
3.4.6
|
GNU
Compiler suite.
|
gromacs
|
3.3.1
|
A
molecular dynamics simulation package. |
hdf5
|
1.6.5
|
A general purpose library and file format for storing
scientific data. |
intel
|
9.0
|
Intel
compiler suite.
|
jdk
|
1.4.2_12
|
Java
Development Kit.
|
mkl
|
8.0.1
|
The
Intel Math Kernel Library provides developers of scientific,
engineering and financial software with a set of linear algebra
routines, fast Fourier transforms, and vectorized math and random
number generation functions.
|
mpich
|
1.2.6
|
Portable
implementation of MPI.
|
|
2.6b1
|
A
parallel, object-oriented
molecular dynamics code. Designed for high-performance simulation
of large biomeclar systems.
|
octave
|
2.1.73
|
A
high-level interactive language for numerical computations. It
provides a convenient command line interface for solving linear and
nonlinear problems numerically.
|
papi
|
3.2.1
|
Performance
Application
Programming Interface. Provides machine and operating system
independent access to hardware performance counters found on most
modern processors. Any of over 100 preset events can be counted through
either a simple high level programming interface or a more
complete low level interface from either C or Fortran.
|
perl
|
5.8.5
|
General
purpose programming and
scripting language.
|
python
|
2.3.4
|
An
interpreted, interactive,
object-oriented programming language.
|
R
|
2.3.1
|
A
language for data analysis and
graphics.
|
ruby |
1.8.5 |
An interpreted scripting language for object-oriented programming. |
scalapack
|
1.7.4
|
Scalable
LAPACK library. Includes a subset of
LAPACK routines
redesigned for distributed memory MIMD parallel computers |
szip
|
2.0
|
Compression
software, providing lossless compression of scientific data. Used
as component of the HDF5 package.
|
|
7.3.0
|
Powerful,
sophisticated, and programmable tool that lets
you debug, analyze, and tune the performance of complex serial,
multiprocessor, and multithreaded programs. |
